Overview:

 

“The main goal of our research is to comprehensively understand how plants respond to pest attacks, not only by studying the induction of defence mechanisms but also by evaluating the potential fitness costs associated with these responses. Expanding our knowledge in this area allows us to explore strategies and compounds that enhance pest resistance without compromising crop yield”.

 

To fulfil this objective, we have established two main lines of research:

 

Research lines:

 

  1. Dissection of the molecular mechanisms underlying plant responses to pest attacks

In our group, we use different approaches to identify and characterize genes and pathways involved in plant response to pests. To this end, we use the Arabidopsis thaliana–Tetranychus urticae model system, as well as other plant and phytophagous species, to study the specificity of the molecular mechanisms. So far, we have identified key genes and pathways involved in plant defence against the spider mite at various levels of the plant defence response (Figure 1).

FIGURE 1 | Summary of plant response to spider mite characterization. Modified from Santamaría et al., 2018.

 

Induced defences have evolved from constitutive defences as a cost-saving strategy. However, the activation of defence responses often entails a fitness cost. Assessing these costs can help in designing pest control strategies that enhance resistance without compromising fitness. Our results show that, in general, the implementation of defences against pests leads to a reduction in growth, photosynthesis, and reproduction (see Figure 2A). In addition, we are interested in the study of the effect of the different parameters surrounding plant herbivore interaction in the final cost (see Figure 2B). In the specific case of the Arabidopsis–spider mite interaction, we have observed that defence activation results in decreased seed production and reduced seed viability during storage (Garcia et al., 2024).

 

FIGURE 2 | Defence-growth trade-off (A) Effect sizes on general parameters related to fitness. (B) A diagram depicting the concept of growth-defence trade-offs, the parameters to evaluate the fitness and the main variables involved. Garcia et al., 2021.


Understanding the molecular mechanisms that regulate the defence–growth trade-off is key to designing pest control strategies that enhance resistance without compromising the plant’s overall fitness. In our laboratory, we combine different molecular approaches to investigate this regulation
(see Figure 3). In the Arabidopsis-spider mite interaction, integrating fitness parameter studies with transcriptomic and hormonomic analyses has enabled us to propose a model for the regulation of the defence-growth trade-off. This model reveals a finely tuned regulatory mechanism that allows the plant to adapt to stress and survive, albeit with a fitness cost (Garcia et al., 2024).

FIGURE 3 | Evaluation of the defence-growth trade-off established upon A. thaliana - T. urticae. The data integration of fitness parameters with transcriptomic, metabolomic and hormonomic results will enable us to achieve a better understanding of the defence-growth trade-off.
 

  1. Exploration of strategies and compounds that enhance plant resistance to pests without incurring fitness costs

Various strategies have been proposed to enhance resistance without compromising fitness. Among these, our laboratory focuses on seed defence priming (SDP) and the identification and application of cell wall-derived damage-associated molecular patterns (DAMPs).


Plants have developed the capacity to respond to previous stimuli by enhancing the activation of inducible defences upon later infestation or herbivore attack. This physiological process, known as defence priming, triggers a minor part of the plant defence response and enables prompter or more effective reactions against future biotic or abiotic stresses. However, although primed plants theoretically endure fewer costs in relation to the direct activation of defences, the physiological alterations while shifting the plant to the alert are bound to cause some allocation and/or ecological costs. Under this scenario, our objective is to identify priming agents that produce higher resistance, minimizing the penalty in plant fitness and to unveil the molecular basis of how these priming treatments modulate the defence-growth trade-off established upon the infestation (see Figure 4). Besides our Arabidopsis-spider mite working model, we will extend our analyses to the related crop Brassica rapa and the herbivorous insect Pieris brassicae. As an example, we just validated the potential of the application of MeJA to the Arabidopsis seeds in defence against both spider mite and Pieris. The molecular mechanism behind were pest specific (Talavera-Mateo et al., 2025).

 


FIGURE 4 | Simplified scheme of the potential effect of “priming” over the plant defence-growth trade-off. The plant cell wall has traditionally been regarded as a physical barrier against infestation by pests and pathogens. In recent years, the scientific community studying plant–pathogen interactions has highlighted the role of cell wall-derived compounds in triggering defence activation and their potential application in pest control. However, this aspect has been less explored in plant–pest interactions. In our group, we aim to investigate the role of the cell wall in defence against pests, considering not only the enhancement of defence responses but also the impact on plant fitness.

 

The plant cell wall has traditionally been regarded as a physical barrier against infestation by pests and pathogens. In recent years, the scientific community studying plant-pathogen interactions have highlighted the role of cell wall-derived compounds in triggering defence activation and their potential application in pathogen control. However, this aspect has been less explored in plant–pest interactions. In our group, we aim to investigate the role of the cell wall in the defence-growth trade-off that occurs in plants upon pest infestation, and to identify cell wall-derived DAMPs that could potentially be used in pest management strategies (see Figure 5).

 


FIGURE 5 | Schematic overview of pattern-triggered immunity (PTI) in plants upon pest infestation. Cell wall degrading enzymes (CWDEs) secreted by herbivory disrupt CW integrity, releasing damage-associated molecular patterns (DAMPs). The defence response is activated by the recognition of these DAMPs, as well as herbivore-associated molecular patterns (HAMPs), by pattern recognition receptors complexes (PRRs and co-PRRs). Elicitor binding to PRRs leads to a series of signalling events, such as membrane depolarization (Vm), activation of Ca2+-channels and influx of Ca2+ into the cytosol, burst of reactive oxygen species (ROS) via activation of RBOHD, membrane depolarization and activation of the mitogen-activated protein kinases (MAPK) cascade. MAPK and Ca2+-dependent kinase (CDPK) cascades trigger transcriptional reprogramming, activating phytohormone (SA, JA, ET) signalling, transcription regulatory factors and synthesis of defensive compounds. 

 

In addition to these main research lines, we collaborate with private companies in the search for plant-derived metabolites or by-products with potential activity in pest defence.


 

Barcenilla Valcárcel, Laura - PhD Student

Frey Domínguez, Carlos - Juan de la Cierva Postdoctoral Fellow

Martínez Muñoz, Manuel - Professor

Pérez Alonso, Marta Marina - Young Investigator Researcher (YIR)

Rodeiro López, Lucía - Technician

Salazar Mendoza, Paolo Salvatore - Visiting Scientist

Santamaría Fernández, Mª Estrella - Associate Professor

Talavera Mateo, Lucía - Postdoctoral Fellow

2025-T1/BIO-36115.PROJECT: Innovative approaches to food security: Analysis of translation to enhance crop resilience to pest (Resilience2pests) Consejería de Educación, Ciencia y Universidades (Comunidad de Madrid)-Ayudas de atracción de talento investigador “César Nombela” 2025. PI: Marta Marina Pérez Alonso.

 

JDC2024-053187-I. Dissecting plant defence-growth trade-offs established upon plant-pest interactions. 2026-2028. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and FSE “El FSE invierte en tu futuro” – Ayudas Juan de la Cierva 2024. PI: Carlos Frey.

 

RED2024-153709-T. Transition to more sustainable pest management through the integration of basic and applied knowledge (REdSOSPlaga). 2025-2027. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain. Coordinator: Carolina Escobar. PI: Mª Estrella Santamaría and other 11 researches.

 

PID2023-147339OB-I00. The role of the plant cell wall in the defence-growth trade-off established in plants upon spider mite infestation (WALL-MITE). 2025-2027. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and FEDER/EU. PI: Mª Estrella Santamaría.

 

CPP2023-010673. Plant metabolites and by-products as a source of biocidal substances for the formulation of an eco-friendly product against spider mites (ECOCIDA). 2024 - 2027. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and European Union NextGenerationEU/PRTR. PI: Mª Estrella Santamaría (UPM), IP: Rosa León (UH) y IP and FERTINAGRO.

 

CNS2022-135194. Unravel the role of plant growth hormones in the defence-growth trade-off established upon plant-pest interaction (PROSPER). 2023-2025. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and European Union NextGenerationEU/PRTR. PI: Mª Estrella Santamaría.

 

Mision CBGP: EoI-MCBGP21:PLANTADAPT_02_CLIMATEPLANT-PEST-VIRUSINTERACT. Understanding how important pest and viral diseases will evolve in the context of climate change. 2022-2025. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and Severo Ochoa Excellence program (CEX2020-000999-S).   Coordinator: Mar Castellano. PIs: Mar Castellano, Mª Estrella Santamaría, Mark Wilkinson and Fernando Ponz.

     

PID2020-112756RA-I00. Effect of seed defence priming on plant defence-growth trade-off established upon plant-pest interaction. 2021-2025. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain.  PI: Mª Estrella Santamaría.

 

APOYO-JOVENES-SUR6Q9-22-YTFC3Z. Defence-growth trade-off in Arabidopsis in response to T. urticae infestation (DECRE-TU). 2022-2024. Comunidad de Madrid, Spain.  PI: Mª Estrella Santamaría




RYC-2017-21814. Plant-pest interaction. 2019-2024. Ministerio de Ciencia, Innovación y Universidades/Agencia Estatal de Investigación (MICIU/AEI), Spain and FSE “El FSE invierte en tu futuro” – Ayudas Ramon y Cajal.  PI: Mª Estrella Santamaría

 

Talavera-Mateo, L., Sabater-Gabriel, A., Garcia, A., Halitschke, R., Santamaria, M.E.✉ 2026. Methyl jasmonate seed priming enhances pest resistance in Arabidopsis and Brassica through species-specific molecular mechanisms. Journal of Experimental Botany erag251. DOI: 10.1093/jxb/erag251


Ojeda-Martinez, D.✉, Boter, M., Ortego, F., Santamaria, M.E.✉ 2026. Unveiling CAZyme modularity patterns: Comparative genomics links domain architecture to arthropod diets and life histories. International Journal of Biological Macromolecules 367, 152547. DOI: 10.1016/j.ijbiomac.2026.152547


Martinez, M. 2025. Molecular interactions between plants and arthropod herbivores in the context of climate change. Journal of Experimental Botany eraf499. DOI: 10.1093/jxb/eraf499


Perez-Alonso, M.M., Talavera-Mateo, L., Ojeda-Martinez, D., Barcenilla-Valcárcel, L., Montesinos, Á., Garcia, A., Frey, C., Boter, M., Martinez, M., Diaz, I., Santamaria, M.E. 2025. The role of plant cell walls in pest resistance: current insights and future perspectives. Journal of Experimental Botany eraf306. DOI: 10.1093/jxb/eraf306


Talavera-Mateo, L., Sabater-Gabriel, A., Garcia, A., Perez-Alonso, M.M., Halitschke, R., Santamaria, M.E. 2025. Methyl Jasmonate Seed Priming Mitigates the Defence-Growth Trade-Off and Tailors Plant Response to Specific Pests. Plant, Cell & Environment. DOI: 10.1111/pce.70105


Ojeda-Martinez, D., Diaz, I., Santamaria, M.E., Ortego, F. 2024. Comparative genomics reveals carbohydrate enzymatic fluctuations and herbivorous adaptations in arthropods. Computational and Structural Biotechnology Journal 23, 3744–3758. DOI: 10.1016/j.csbj.2024.10.027


Garcia, A., Talavera-Mateo, L., Petrik, I., Oklestkova, J., Novak, O., Santamaria, M.E. 2024. Spider mite infestation triggers coordinated hormonal trade-offs enabling plant survival with a fitness cost. Physiologia Plantarum 176, e14479. DOI: 10.1111/ppl.14479


Montesinos, Á., Sacristán, S., del Prado-Polonio, P., Arnaiz, A., Díaz-González, S., Diaz, I., Santamaria, M.E. 2024. Contrasting plant transcriptome responses between a pierce-sucking and a chewing herbivore go beyond the infestation site. BMC Plant Biology 24, 120. DOI: 10.1186/s12870-024-04806-1


Arnaiz, A., Romero-Puertas, M.C., Santamaria, M.E., Rosa-Diaz, I., Arbona, V., Muñoz, A., Grbic, V., González-Melendi, P., Mar Castellano, M., Sandalio, L.M., Martinez, M., Diaz, I. 2023. The Arabidopsis thioredoxin TRXh5regulates the S-nitrosylation pattern of the TIRK receptor being both proteins essential in the modulation of defences to Tetranychus urticae. Redox Biology 67, 102902. DOI: 10.1016/j.redox.2023.102902


Bruinsma, K., Rioja, C., Zhurov, V., Santamaria, M.E., Arbona, V., Navarro, M., Cazaux, M., Auger, P., Migeon, A., Wybouw, N., Van Leeuwen, T., Diaz, I., Gómez-Cadenas, A., Grbic, M., Navajas, M., Grbic, V. 2023. Host-adaptation and specialization in Tetranychidae mites. Plant Physiology kiad412. DOI: 10.1093/plphys/kiad412


Talavera-Mateo, L., Garcia, A., Santamaria, M.E. 2023. A comprehensive meta-analysis reveals the key variables and scope of seed defense priming. Frontiers in Plant Science 14. DOI: 10.3389/fpls.2023.1208449


Rosa-Diaz, I., Santamaria, M.E., Acien, J.M., Diaz, I. 2023. Jasmonic acid catabolism in Arabidopsis defence against mites. Plant Science 334, 111784. DOI: 10.1016/j.plantsci.2023.111784


Garcia, A., Talavera-Mateo, L., Santamaria, M.E. 2022. An automatic method to quantify trichomes in Arabidopsis thaliana. Plant Science 323, 111391. DOI: 10.1016/j.plantsci.2022.111391


Arnaiz, A., Santamaria, M.E., Rosa-Diaz, I., Garcia, I., Dixit, S., Vallejos, S., Gotor, C., Martinez, M., Grbic, V., Diaz, I. 2022. Hydroxynitrile lyase defends Arabidopsis against Tetranychus urticae. Plant Physiology kiac170. DOI: 10.1093/plphys/kiac170


Ojeda-Martinez, D., Diaz, I., Santamaria, M.E. 2022. Transcriptomic Landscape of Herbivore Oviposition in Arabidopsis: A Systematic Review. Frontiers in Plant Science. DOI: 10.3389/fpls.2021.772492


Pérez-Alonso, M.-M., Sánchez-Parra, B., Ortiz-García, P., Santamaría, M.E., Díaz, I., Pollmann, S. 2021. Jasmonic Acid-Dependent MYC Transcription Factors Bind to a Tandem G-Box Motif in the YUCCA8 and YUCCA9 Promoters to Regulate Biotic Stress Responses. International Journal of Molecular Sciences 22, 9768. DOI: 10.3390/ijms22189768


Ojeda-Martinez, D., Martinez, M., Diaz, I., Santamaria, M.E. 2021. Spider mite egg extract modifies Arabidopsis response to future infestations. Scientific Reports 11, 17692. DOI: 10.1038/s41598-021-97245-z


Garcia, A., Martinez, M., Diaz, I., Santamaria, M.E. 2021. The Price of the Induced Defense Against Pests: A Meta-Analysis. Frontiers in Plant Science 11, 2285. DOI: 10.3389/fpls.2020.615122


Santamaria, M.E., Garcia, A., Arnaiz, A., Rosa-Diaz, I., Romero-Hernandez, G., Diaz, I., Martinez, M. 2021. Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores. Journal of Integrative Plant Biology 63, 312–326. DOI: 10.1111/jipb.13026


Ojeda-Martinez, D., Martinez, M., Diaz, I., Santamaria, M.E. 2020. Saving time maintaining reliability: a new method for quantification of Tetranychus urticae damage in Arabidopsis whole rosettes. BMC Plant Biology 20, 397. DOI: 10.1186/s12870-020-02584-0


Santamaría, M.E., Martínez, M., Arnaiz, A., Rioja, C., Burow, M., Grbic, V., Díaz, I. 2019. An Arabidopsis TIR-Lectin Two-Domain Protein Confers Defense Properties against Tetranychus urticae. Plant Physiology 179, 1298–1314. DOI: 10.1104/pp.18.00951


Arnaiz, A., Martinez, M., Gonzalez-Melendi, P., Grbic, V., Diaz, I., Santamaria, M.E. 2019. Plant Defenses Against Pests Driven by a Bidirectional Promoter. Frontiers in Plant Science 10, 930. DOI: 10.3389/fpls.2019.00930