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- ABA signaling branches out: emerging ABA-related signaling functions in Solanum tuberosum
- Using an embryo specific promoter to modify iron distribution pattern in Arabidopsis
- The nanobiotechnological significance of turnip mosaic virus: much more than a plant pathogen
- Identifying Reference Genes for Quinoa Seed Expression Analysis in Salty Environments
- Make laboratory automation easy and standard
- Comparison of gene clustering criteria reveals intrinsic uncertainty in pangenome analyses
- Graphs and networks to analyse synthetic genetic circuits
- Bring Your Own Data Workshops: building expertise on FAIR Data
Bernasconi, A., Lorrain, C., Flury, P., Alassimone, J., McDonald, B.A., Sánchez-Vallet, A. 2023. Virulent strains of Zymoseptoria tritici suppress the host immune response and facilitate the success of avirulent strains in mixed infections. PLOS Pathogens 19, e1011767. DOI: 10.1371/journal.ppat.1011767
- Iron Homeostasis in Azotobacter vinelandii
Poulicard, N., Pagán, I., González-Jara, P., Mora, M.Á., Hily, J.-M., Fraile, A., Piñero, D., García-Arenal, F. 2023. Repeated loss of the ability of a wild pepper disease resistance gene to function at high temperatures suggests that thermoresistance is a costly trait. New Phytologist. DOI: 10.1111/nph.19371
Pacios, L.F., Sánchez, F., Ponz, F. 2023. Intrinsic disorder in the dynamic evolution of structure, stability, and flexibility of potyviral VLP assemblies: A computational study. International Journal of Biological Macromolecules 127798. DOI: 10.1016/j.ijbiomac.2023.127798
Rodríguez, S., García-García, A., Garcia-Calvo, E., Esteban, V., Pastor-Vargas, C., Díaz-Perales, A., García, T., Martín, R. 2023. Generation of an Ovomucoid-Immune scFv Library for the Development of Novel Immunoassays in Hen’s Egg Detection. Foods 12, 3831. DOI: 10.3390/foods12203831
- Cu+ -chaperone NCC1 is required for symbiotic nitrogen fixation
- Sas3-mediated histone acetylation regulates effector gene activation in a plant pathogenic fungus
- Moderate cold primes root stem cell activity and regeneration through CBF3
- Exploring dynamic auxin feedback signaling with synthetic gene circuits
- Plant-LTPs' Ligand Role in Allergic Sensitization
Arnaiz, A., Romero-Puertas, M.C., Santamaria, M.E., Rosa-Diaz, I., Arbona, V., Muñoz, A., Grbic, V., González-Melendi, P., Mar Castellano, M., Sandalio, L.M., Martinez, M., Diaz, I. 2023. The Arabidopsis thioredoxin TRXh5regulates the S-nitrosylation pattern of the TIRK receptor being both proteins essential in the modulation of defences to Tetranychus urticae. Redox Biology 67, 102902. DOI: 10.1016/j.redox.2023.102902
Sreedasyam, A., Plott, C., Hossain, M.S., Lovell, J.T., Grimwood, J., Jenkins, J.W., Daum, C., Barry, K., Carlson, J., Shu, S., Phillips, J., Amirebrahimi, M., Zane, M., Wang, M., Goodstein, D., Haas, F.B., Hiss, M., Perroud, P.-F., Jawdy, S.S., Yang, Y., Hu, R., Johnson, J., Kropat, J., Gallaher, S.D., Lipzen, A., Shakirov, E.V., Weng, X., Torres-Jerez, I., Weers, B., Conde, D., Pappas, M.R., Liu, L., Muchlinski, A., Jiang, H., Shyu, C., Huang, P., Sebastian, J., Laiben, C., Medlin, A., Carey, S., Carrell, A.A., Chen, J.-G., Perales, M., Swaminathan, K., Allona, I., Grattapaglia, D., Cooper, E.A., Tholl, D., Vogel, J.P., Weston, D.J., Yang, X., Brutnell, T.P., Kellogg, E.A., Baxter, I., Udvardi, M., Tang, Y., Mockler, T.C., Juenger, T.E., Mullet, J., Rensing, S.A., Tuskan, G.A., Merchant, S.S., Stacey, G., Schmutz, J. 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom. Nucleic Acids Research 51, 8383–8401. DOI: 10.1093/nar/gkad616
Zhang, C., Dai, Z., Ferrier, T., Orduña, L., Santiago, A., Peris, A., Wong, D.C.J., Kappel, C., Savoi, S., Loyola, R., Amato, A., Kozak, B., Li, M., Liang, A., Carrasco, D., Meyer-Regueiro, C., Espinoza, C., Hilbert, G., Figueroa-Balderas, R., Cantu, D., Arroyo-Garcia, R., Arce-Johnson, P., Claudel, P., Errandonea, D., Rodríguez-Concepción, M., Duchêne, E., Huang, S.C., Castellarin, S.D., Tornielli, G.B., Barrieu, F., Matus, J.T. 2023. MYB24 orchestrates terpene and flavonol metabolism as light responses to anthocyanin depletion in variegated grape berries. The Plant Cell koad228. DOI: 10.1093/plcell/koad228
Renau-Morata, B., Cebolla-Cornejo, J., Carrillo, L., Gil-Villar, D., Martí, R., Jiménez-Gómez, J.M., Granell, A., Monforte, A.J., Medina, J., Molina, R.V., Nebauer, S.G. 2024. Identification of Solanum pimpinellifolium genome regions for increased resilience to nitrogen deficiency in cultivated tomato. Scientia Horticulturae 323, 112497. DOI: 10.1016/j.scienta.2023.112497
Kuhn, J.H., Abe, J., Adkins, S., Alkhovsky, S.V., Avšič-Županc, T., Ayllón, M.A., 2023. Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota). Journal of General Virology 104, 001864. DOI: 10.1099/jgv.0.001864
- Host-adaptation and specialization in Tetranychidae mites
Babalola, B., Fraile, A., García-Arenal, F., McLeish, M. 2023. Ecological Strategies for Resource Use by Three Bromoviruses in Anthropic and Wild Plant Communities. Viruses 15, 1779. DOI: 10.3390/v15081779
- Advanced tools for precision genetic engineering in microbes
Arnaiz, A., Lucas Vallejo-García, J., Vallejos, S., Diaz, I. 2023. Isolation and Quantification of Mandelonitrile from Arabidopsis thaliana Using Gas Chromatography/Mass Spectrometry. Bio-protocol 13. DOI: 10.21769/BioProtoc.4700
- A comprehensive meta-analysis reveals the key variables and scope of Seed Defence
- Jasmonate-derivatives modulate plant defences against phytophagous mites
Rebaque, D., López, G., Sanz, Y., Vilaplana, F., Brunner, F., Mélida, H., Molina, A. 2023. Subcritical water extraction of Equisetum arvense biomass withdraws cell wall fractions that trigger plant immune responses and disease resistance. Plant Molecular Biology. DOI: 10.1007/s11103-023-01345-5
- A comparison of DNA methylation profiling techniques in application to crop genomes
- Forging a symbiosis: transition metal delivery in symbiotic nitrogen fixation
Ballesteros-Gutiérrez, M., Albareda, M., Barbas, C., López-Gonzálvez, Á., Dunn, M.F., Palacios, J.M. 2023. A host-specific diaminobutyrate aminotransferase contributes to symbiotic performance, homoserine metabolism, and competitiveness in the Rhizobium leguminosarum/Pisum sativum system. Frontiers in Microbiology 14. DOI: 10.3389/fmicb.2023.1182563
- Hydrogen peroxide and calcium ion form circuits that amplify plant stress responses
- Mechanical properties control the formation of bacterial colonies
Haro, R., Lanza, M., Aguilella, M., Sanz- García, E., Benito, B. 2023. The transportome of the endophyte Serendipita indica in free life and symbiosis with Arabidopsis and its expression in moderate salinity. Frontiers in Microbiology 14. DOI: 10.3389/fmicb.2023.1191255
- Atlas of mRNA translation and decay for bacteria
- ICTV Virus Taxonomy Profile: Hypoviridae 2023
- Mycoviruses as a part of the global virome: diversity, evolutionary links and lifestyle
- A rhizobial effector that benefits bacterial competition and nodule occupancy has been identified
- Computer models of cell polarity establishment in plants
Alarcon, P., Braun, I., Hartley, E., Olson, D., Benis, N., Cornet, R., Wilkinson, M., Walls, R.L. 2023. Leveraging Biolink as a “Rosetta Stone” Between C-Path and EJP-RD Semantic Models Provides Emergent Interoperability. Journal of the Society for Clinical Data Management 2. DOI: 10.47912/jscdm.130
- More about where plants place in the fight against pandemics
Boter, M., Diaz, I. 2023. Cyanogenesis, a Plant Defence Strategy against Herbivores. International Journal of Molecular Sciences 24, 6982. DOI: 10.3390/ijms24086982
- Ethylene and Jasmonates Signaling Network Mediating Secondary Metabolites under Abiotic Stress
Ramos, P., Gundel, P.E., Pollmann, S. 2023. Editorial: Molecular and biochemical effects exerted by the interaction of symbiotic microorganisms with plants to improve their response to environmental stresses. Frontiers in Ecology and Evolution 11. DOI: 10.3389/fevo.2023.1183310
- Effects of plant community structure in soil bacterial communities in extreme natural ecosystems
- DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus
- Ecology and genetics in the evolution of plant virus host range
Abril-Urias, P., Ruiz-Ferrer, V., Cabrera, J., Olmo, R., Silva, A.C., Díaz-Manzano, F.E., Domínguez-Figueroa, J., Martínez-Gómez, Á., Gómez-Rojas, A., Moreno-Risueno, M.Á., Fenoll, C., Escobar, C. 2023. Divergent regulation of auxin responsive genes in root-knot and cyst nematodes feeding sites formed in Arabidopsis. Frontiers in Plant Science 14. DOI: 10.3389/fpls.2023.1024815
- Plant Pathogenic Microorganisms: State-of-the-Art Research in Spain
Jiménez-Cantizano, A., Puig-Pujol, A., Arroyo-García, R. 2023. Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers. Horticulturae 9, 316. DOI: 10.3390/horticulturae9030316
Martin del Campo, J.S., Rigsbee, J., Bueno Batista, M., Mus, F., Rubio, L.M., Einsle, O., Peters, J.W., Dixon, R., Dean, D.R., Dos Santos, P.C. 2023. Overview of physiological, biochemical, and regulatory aspects of nitrogen fixation in Azotobacter vinelandii. Critical Reviews in Biochemistry and Molecular Biology 1–47. DOI: 10.1080/10409238.2023.2181309
- When intrinsically disordered parts are necessary to obtain highly ordered structures
Vergara, Z., Gomez, M.S., Desvoyes, B., Sequeira-Mendes, J., Masoud, K., Costas, C., Noir, S., Caro, E., Mora-Gil, V., Genschik, P., Gutierrez, C. 2023. Distinct roles of Arabidopsis ORC1 proteins in DNA replication and heterochromatic H3K27me1 deposition. Nature Communications 14, 1270. DOI: 10.1038/s41467-023-37024-8
- A comparison of methods for training population optimization in genomic selection
- Designing novel strategies for improving traditional legumes
- Dual domestication process in grapevine
- A computational protocol to identify genes involved in cancer evolution and pathogen adaptation
- HOP co-chaperones play a main role in gibberellin signaling
Mihelj, P., Abreu, I., Moreyra, T., González-Guerrero, M., Raimunda, D. 2023. Functional Characterization of the Co2+ Transporter AitP in Sinorhizobium meliloti: A New Player in Fe2+ Homeostasis. Applied and Environmental Microbiology e01901-22. DOI: 10.1128/aem.01901-22
- New roles of CDF1 in tuber yield and starch and amino acid content in potato
- Symbiosis between legumes and nitrogen-fixing bacteria promotes drought tolerance
- Temperature changes in the root ecosystem affect plant functionality
Paprocka, M., Dancewicz, K., Kordan, B., Damszel, M., Sergiel, I., Biesaga, M., Mroczek, J., Arroyo Garcia, R.A., Gabryś, B. 2023. Probing behavior of Aphis fabae and Myzus persicae on three species of grapevines with analysis of grapevine leaf anatomy and allelochemicals. The European Zoological Journal 90, 83–100. DOI: 10.1080/24750263.2022.2162615
Ortiz-García, P., González Ortega-Villaizán, A., Onejeme, F.C., Müller, M., Pollmann, S. 2023. Do Opposites Attract? Auxin-Abscisic Acid Crosstalk: New Perspectives. International Journal of Molecular Sciences 24, 3090. DOI: 10.3390/ijms24043090
Akdemir, D., Somo, M., Isidro-Sanchéz, J. 2023. An Expectation-Maximization Algorithm for Combining a Sample of Partially Overlapping Covariance Matrices. Axioms 12, 161. DOI: 10.3390/axioms12020161
Martín-Dacal, M., Fernández-Calvo, P., Jiménez-Sandoval, P., López, G., Garrido-Arandía, M., Rebaque, D., del Hierro, I., Berlanga, D.J., Torres, M.Á., Kumar, V., Mélida, H., Pacios, L.F., Santiago, J., Molina, A. 2022. Arabidopsis immune responses triggered by cellulose and mixed-linked glucan oligosaccharides require a group of Leucine-Rich Repeat-Malectin Receptor Kinases. The Plant Journal. DOI: 10.1111/tpj.16088
Canales, J., Arenas-M, A., Medina, J., Vidal, E.A. 2023. A Revised View of the LSU Gene Family: New Functions in Plant Stress Responses and Phytohormone Signaling. International Journal of Molecular Sciences 24, 2819. DOI:
- New types of viral nanoparticles
- Crops roots use different strategies to respond to warm temperature
- Plant Virus Adaptation to New Hosts: A Multi-scale Approach
Rossatto, T., Souza, G.M., do Amaral, M.N., Auler, P.A., Pérez-Alonso, M.-M., Pollmann, S., Braga, E.J.B. 2023. Cross-stress memory: Salt priming at vegetative growth stages improves tolerance to drought stress during grain-filling in rice plants. Environmental and Experimental Botany 206, 105187. DOI: 10.1016/j.envexpbot.2022.105187
- Alternative scoring methods of fusarium head blight resistance for genomic assisted breeding
- mThe barriers to "going FAIR" and identification of their solutions
Dijk, W., Villa, C., Benedé, S., Vassilopoulou, E., Mafra, I., Garrido-Arandia, M., Martínez Blanco, M., Bouchaud, G., Hoppenbrouwers, T., Bavaro, S.L., Giblin, L., Knipping, K., Castro, A.M., Delgado, S., Costa, J., Bastiaan-Net, S. 2022. Critical features of an in vitro intestinal absorption model to study the first key aspects underlying food allergen sensitization. Comprehensive Reviews in Food Science and Food Safety. DOI: 10.1111/1541-4337.13097
Pagán, I., García-Arenal, F. 2022. Cucumber Mosaic Virus-Induced Systemic Necrosis in Arabidopsis thaliana: Determinants and Role in Plant Defense. Viruses 14, 2790. DOI: 10.3390/v14122790
- When plants are Trojan horses for viruses
- Autophagy: an essential though still underexplored cellular process in seeds
Meile, L., Garrido-Arandia, M., Bernasconi, Z., Peter, J., Schneller, A., Bernasconi, A., Alassimone, J., McDonald, B.A., Sánchez-Vallet, A. 2022. Natural variation in Avr3D1 from Zymoseptoria sp. contributes to quantitative gene-for-gene resistance and to host specificity. New Phytologist. DOI: 10.1111/nph.18690
- Plant chromatin feels the heat to regulate the time of flowering
Regner, A., Szepannek, N., Wiederstein, M., Fakhimahmadi, A., Pacios, L.F., Blokhuis, B.R., Redegeld, F.A., Hofstetter, G., Dvorak, Z., Jensen-Jarolim, E., Hufnagl, K., Roth-Walter, F. 2023. Binding to Iron Quercetin Complexes Increases the Antioxidant Capacity of the Major Birch Pollen Allergen Bet v 1 and Reduces Its Allergenicity. Antioxidants 12, 42. DOI: 10.3390/antiox12010042
- High spatiotemporal virus diversity and ecological comparments
McLeish, M.J., Zamfir, A.D., Babalola, B.M., Peláez, A., Fraile, A., García-Arenal, F. 2022. Metagenomics show high spatiotemporal virus diversity and ecological compartmentalisation: Virus infections of melon, Cucumis melo, crops, and adjacent wild communities. Virus Evolution 8, veac095. DOI: 10.1093/ve/veac095
Gálvez-Roldán, C., Cerna-Vargas, J.P., Rodriguez Herva, J.J., Krell, T., Santamaria-Hernando, S., López-Solanilla, E. 2023. A NIT sensor domain containing chemoreceptor is required for a successful entry and virulence of Dickeya dadantii 3937 in potato plants. Phytopathology®. DOI: 10.1094/PHYTO-10-22-0367-R
- Plant-phytopathogenic bacteria interactions alter the response to herbivory
- Viruses are far more than pathogenic agents in plants
- New globally distributed bacterial phyla within the FCB superphylum
- Plants signal herbivore attacks using positive and negative regulators
Mestre, M.R., Gao, L.A., Shah, S.A., López-Beltrán, A., González-Delgado, A., Martínez-Abarca, F., Iranzo, J., Redrejo-Rodríguez, M., Zhang, F., Toro, N. 2022. UG/Abi: a highly diverse family of prokaryotic reverse transcriptases associated with defense functions. Nucleic Acids Research 50, 6084–6101. DOI: 10.1093/nar/gkac467
Kuhn, J.H., Adkins, S., Alkhovsky, S.V., Avšič-Županc, T., Ayllón, M.A., et al. 20222022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology 167, 2857–2906. DOI: 10.1007/s00705-022-05546-z
- Polar auxin transport modulates early leaf flattening
- Costs of resistance-breaking and virus genetic diversity
- Standard bioengineering tools
- Beneficial effects of fungal endophytes in major agricultural crops
- Going Viral: Virus-Based Biological Control Agents for Plant Protection
- ICTV Virus Taxonomy Profile: Mymonaviridae 2022
- Editorial: Integrating multi-scale approaches for predicting microbiome ecology and evolution
Carrasco, D., Zhou-Tsang, A., Rodriguez-Izquierdo, A., Ocete, R., Revilla, M.A., Arroyo-García, R. 2022. Coastal Wild Grapevine Accession (Vitis vinifera L. ssp.sylvestris) Shows Distinct Late and Early Transcriptome Changes under Salt Stress in Comparison to Commercial Rootstock Richter 110. Plants 11, 2688. DOI: 10.3390/plants11202688
- Controlling electrical activity with phytohormones
- How do leaf and floral primordia acquire distinct shape?
- Comparative and evolutionary analysis of Arabidopsis RIN4-like/NOI proteins induced by herbivory
- Connecting genetic networks to electronic systems
- Enhancing microbial hydrogen production using directed genome evolution
- Alterations of plants-microbe interactions under environmental stress conditions
- Simplifying the task of becoming FAIR
- Using networks to design genetic circuits
- Functional expression of the nitrogenase Fe protein in transgenic rice
- Nitrogenase Cofactor Maturase NifB Isolated from Transgenic Rice is Active in FeMo-co Synthesis
- Fungal endophytes of Brassicaceae: Molecular interactions and crop benefits
Iranzo, J., Gruenhagen, G., Calle-Espinosa, J., Koonin, E.V. 2022. Pervasive conditional selection of driver mutations and modular epistasis networks in cancer. Cell Reports 40, 111272. DOI: 10.1016/j.celrep.2022.111272
Pérez-Alonso, M.-M., Guerrero-Galán, C., González Ortega-Villaizán, A., Ortiz-García, P., Scholz, S.S., Ramos, P., Sakakibara, H., Kiba, T., Ludwig-Müller, J., Krapp, A., Oelmüller, R., Vicente-Carbajosa, J., Pollmann, S. 2022. The calcium sensor CBL7 is required for Serendipita indica-induced growth stimulation in Arabidopsis thaliana, controlling defense against the endophyte and K+ homoeostasis in the symbiosis. Plant, Cell & Environment. DOI: 10.1111/pce.14420
Botas, J., Rodríguez del Río, Á., Giner-Lamia, J., Huerta-Cepas, J. 2022. GeCoViz: genomic context visualisation of prokaryotic genes from a functional and evolutionary perspective. Nucleic Acids Research 50, W352–W357. DOI: 10.1093/nar/gkac367
- Transmission through seeds: The unknown life of plant viruses
- PhyloCloud: an online platform for visualizing and making sense of phylogenomic data
- Viral nanoparticles are useful in food allergy research
Barrero-Gil, J., Bouza-Morcillo, L., Espinosa-Cores, L., Piñeiro, M., Jarillo, J.A. 2022. H4 acetylation by the NuA4 complex is required for plastid transcription and chloroplast biogenesis. Nature Plants 1–12. DOI: 10.1038/s41477-022-01229-4
Shahinnia, F., Geyer, M., Schürmann, F., Rudolphi, S., Holzapfel, J., Kempf, H., Stadlmeier, M., Löschenberger, F., Morales, L., Buerstmayr, H., Isidro y Sánchez, J., Akdemir, D., Mohler, V., Lillemo, M., Hartl, L. 2022. Genome-wide association study and genomic prediction of resistance to stripe rust in current Central and Northern European winter wheat germplasm. Theoretical and Applied Genetics. DOI: 10.1007/s00122-022-04202-z
González-Gamboa, I., Velázquez-Lam, E., Lobo-Zegers, M.J., Frías-Sánchez, A.I., Tavares-Negrete, J.A., Monroy-Borrego, A., Menchaca-Arrendondo, J.L., Williams, L., Lunello, P., Ponz, F., Alvarez, M.M., Trujillo-de Santiago, G. 2022. Gelatin-methacryloyl hydrogels containing turnip mosaic virus for fabrication of nanostructured materials for tissue engineering. Frontiers in Bioengineering and Biotechnology 10. DOI: 10.3389/fbioe.2022.907601
Murillo, A.M.M., Valle, L.G., Ramírez, Y., Sánchez, M.J., Santamaría, B., Molina-Roldan, E., Ortega-Madueño, I., Urcelay, E., Tramarin, L., Herreros, P., Díaz-Perales, A., Garrido-Arandia, M., Tome-Amat, J., Hernández-Ramírez, G., Espinosa, R.L., Laguna, M.F., Holgado, M. 2022. Integration of Multiple Interferometers in Highly Multiplexed Diagnostic KITs to Evaluate Several Biomarkers of COVID-19 in Serum. Biosensors 12, 671. DOI: 10.3390/bios12090671
- FAIR Data Point: A FAIR-oriented approach for metadata publication
- There is room for plant biotechnology in the fight against cancer
- Root growth of crops is altered by climate change
- First report of carrot torrado virus 1 (CaTV1) naturally infecting carrots in Spain
- The auxin precursor indole-3-acetamide controls a specific subset of stress-related target genes
- Discovery of two new satellite RNAs with hammerhead structures in French and Spanish Carrots
- Presence of Apium virus Y in Spanish wild carrots
- An automatic method to quantify trichomes in Arabidopsis thaliana
- Rapid and simple colorimetric method developed for screening of nitrogenase variants
- Farewell to fertilizers? A step further
Santamaría-Hernando, S., López-Maroto, Á., Galvez-Roldán, C., Munar-Palmer, M., Monteagudo-Cascales, E., Rodríguez-Herva, J.J., Krell, T., López-Solanilla, E. 2022. Pseudomonas syringae pv. tomato infection of tomato plants is mediated by GABA and l-Pro chemoperception. Molecular Plant Pathology 23, 1433–1445. DOI: 10.1111/mpp.13238
- Hydroxynitrile lyase defends Arabidopsis against Tetranychus urticae
Forgia, M., Chiapello, M., Daghino, S., Pacifico, D., Crucitti, D., Oliva, D., Ayllon, MA., Turina, M. 2022 Three new clades of putative viral RNA-dependent RNA polymerases with rare or unique catalytic triads discovered in libraries of ORFans from powdery mildews and the yeast of oenological interest Starmerella bacillaris. Virus Evolution 8, veac038. DOI: 10.1093/ve/veac038
- Gene Overlapping as a Modulator of Begomovirus Evolution
- Deciphering the essential role of HOP co-chaperones in auxin signaling
- New Insights into the Role of LSU Gene-Family in Plant Responses to Sulfate-Deficiency
Galán-Cubero, R., Córdoba, L., Rodríguez-Romero, J., Chiapello, M., Turina, M., Ayllón, M.A. 2022. Molecular Data of a Novel Penoulivirus Associated with the Plant-Pathogenic Fungus Erysiphe necator. Phytopathology® PHYTO-12-21-0536-A. DOI: 10.1094/PHYTO-12-21-0536-A
Diem, L., Neuherz, B., Rohrhofer, J., Koidl, L., Asero, R., Brockow, K., Diaz Perales, A., Faber, M., Gebhardt, J., Torres, M., Jensen-Jarolim, E., Zehetmayer, S., Untersmayr, E. n.d. Real-life evaluation of molecular multiplex IgE test methods in the diagnosis of pollen associated food allergy. Allergy n/a. DOI: 10.1111/all.15329
- Development of a tool to study fungus-plant interactions
- A new protein belonging to the Lipid Transfer Proteins family has been identified in durum wheat
Pali-Schöll, I., Bianchini, R., Afify, S.M., Hofstetter, G., Winkler, S., Ahlers, S., Altemeier, T., Mayerhofer, H., Hufnagl, K., Korath, A.D.J., Pranger, C., Widhalm, R., Hann, S., Wittek, T., Kasper-Giebl, A., Pacios, L.F., Roth-Walter, F., Vercelli, D., von Mutius, E., Jensen-Jarolim, E. 2022. Secretory protein beta-lactoglobulin in cattle stable dust may contribute to the allergy-protective farm effect. Clinical and Translational Allergy 12, e12125. DOI: 10.1002/clt2.12125
- Translation Regulation and Protein Folding
- Achieving FAIRness via Comma Separated Values and “smart” templates
- Keeping our skin healthy: the first step to prevent food allergy
- How does Flowering locus T2 work in poplar? Shedding light on its novel functions
- Micronutrient homeostasis in plants for more sustainable agriculture and healthier human nutrition
- Plant-Pest Interactions: a research topic of interest for pest control
Ortego, F., Broekgaarden, C., Suzuki, T., Broufas, G., Smagghe, G., Diaz, I. 2021. Editorial: Plant-Pest Interactions Volume II: Hemiptera. Frontiers in Plant Science 12, 1978. DOI: 10.3389/fpls.2021.748999
Broufas, G., Ortego, F., Suzuki, T., Smagghe, G., Broekgaarden, C., Diaz, I. 2022. Editorial: Plant-Pest Interactions Volume I: Acari and Thrips. Frontiers in Plant Science 12. DOI: 10.3389/fpls.2021.773439
- Epigenetic modifiers regulate flowering time in Brassica crops
- Turnip mosaic virus, a virus for all seasons
- Transcriptomic landscape of hervibore oviposition in Arabidopsis: a systematic review
- Towards laboratory automation
Contreras-López, O., Vidal, E.A., Riveras, E., Alvarez, J.M., Moyano, T.C., Sparks, E.E., Medina, J., Pasquino, A., Benfey, P.N., Coruzzi, G.M., Gutiérrez, R.A. 2022. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate. Proceedings of the National Academy of Sciences 119. DOI: 10.1073/pnas.2107879119
- Plant Science’s Contribution to fighting viral pandemics: COVID-19 as a case study
- The relevance of plant LTPs: from agriculture to health
Pérez-González, A., Jimenez-Vicente, E., Gies-Elterlein, J., Salinero-Lanzarote, A., Yang, Z.-Y., Einsle, O., Seefeldt, L.C., Dean, D.R. 2021. Specificity of NifEN and VnfEN for the Assembly of Nitrogenase Active Site Cofactors in Azotobacter vinelandii. mBio 12, e0156821. DOI: 10.1128/mBio.01568-21
- May the dark be with roots: Effects of root illumination in vitro experiments
Conchillo, L.B., Haro, R., Benito, B. 2021. K+ Nutrition Exchange in the Serendipita-Arabidopsis Symbiosis: Study of the Fungal K+ Transporters Involved. Frontiers in Ecology and Evolution 9, 876. DOI: 10.3389/fevo.2021.789371
- Towards the biogeography of prokaryotic genes
- A quasi-universal method to isolate RNA?
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Cadot, S., Gfeller, V., Hu, L., Singh, N., Sánchez-Vallet, A., Glauser, G., Croll, D., Erb, M., van der Heijden, M.G.A., Schlaeppi, K. 2021. Soil composition and plant genotype determine benzoxazinoid-mediated plant–soil feedbacks in cereals. Plant, Cell & Environment. DOI: 10.1111/pce.14184
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López-González, S., Gómez-Mena, C., Sánchez, F., Schuetz, M., Lacey Samuels, A., Ponz, F. 2021. The Effects of Turnip Mosaic Virus Infections on the Deposition of Secondary Cell Walls and Developmental Defects in Arabidopsis Plants Are Virus-Strain Specific. Frontiers in Plant Science 12, 2221. DOI: 10.3389/fpls.2021.741050
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Santamaria, M.E., Garcia, A., Arnaiz, A., Rosa-Diaz, I., Romero-Hernandez, G., Diaz, I., Martinez, M. 2021. Comparative transcriptomics reveals hidden issues in the plant response to arthropod herbivores. Journal of Integrative Plant Biology 63, 312–326. DOI: 10.1111/jipb.13026
McLeish, M., Peláez, A., Pagán, I., Gavilán, R., Fraile, A., García-Arenal, F. 2021. Structuring of plant communities across agricultural landscape mosaics: the importance of connectivity and the scale of effect. BMC Ecology and Evolution 21, 173. DOI: 10.1186/s12862-021-01903-9
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Contreras, Á., Merino, I., Álvarez, E., Bolonio, D., Ortiz, J.-E., Oñate-Sánchez, L., Gómez, L. 2021. A poplar short-chain dehydrogenase reductase plays a potential key role in biphenyl detoxification. Proceedings of the National Academy of Sciences USA 118, e2103378118. DOI: 10.1073/pnas.2103378118
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- High genetic diversity of endosymbiotic bacteria from blue lupin (Lupinus angustifolius)
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Gandullo, J., Álvarez, R., Feria, A.-B., Monreal, J.-A., Díaz, I., Vidal, J., Echevarría, C. 2021. A conserved C-terminal peptide of sorghum phosphoenolpyruvate carboxylase promotes its proteolysis, which is prevented by Glc-6P or the phosphorylation state of the enzyme. Planta 254, 43. DOI: 10.1007/s00425-021-03692-3
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Renau-Morata, B., Molina, R.-V., Minguet, E.G., Cebolla-Cornejo, J., Carrillo, L., Martí, R., García-Carpintero, V., Jiménez-Benavente, E., Yang, L., Cañizares, J., Canales, J., Medina, J., Nebauer, S.G. 2021. Integrative Transcriptomic and Metabolomic Analysis at Organ Scale Reveals Gene Modules Involved in the Responses to Suboptimal Nitrogen Supply in Tomato. Agronomy 11, 1320. DOI: 10.3390/agronomy11071320
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Skypala, I.J., Asero, R., Barber, D., Cecchi, L., Diaz-Perales, A., Hoffmann-Sommergruber, K., Pastorello, E.A., Swoboda, I., Bartra, J., Ebo, D.G., Faber, M.A., Fernández-Rivas, M., Gomez, F., Konstantinopoulos, A.P., Luengo, O., Ree, R. van, Scala, E., Till, S.J. 2021. Non-specific lipid-transfer proteins: Allergen structure and function, cross-reactivity, sensitization, and epidemiology. Clinical and Translational Allergy 11, e12010. DOI: 10.1002/clt2.12010
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Ruiz-Padilla, A., Rodríguez-Romero, J., Gómez-Cid, I., Pacifico, D., Ayllón, M.A. 2021. Novel Mycoviruses Discovered in the Mycovirome of a Necrotrophic Fungus. mBio 12. DOI: 10.1128/mBio.03705-20
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Durán, D., Albareda, M., García, C., Marina, A.-I., Ruiz-Argüeso, T., Palacios, J.-M. 2021. Proteome Analysis Reveals a Significant Host-Specific Response in Rhizobium leguminosarum bv. viciae Endosymbiotic Cells. Molecular & Cellular Proteomics 20, 100009. DOI: 10.1074/mcp.RA120.002276
Smári Hilmarsson, H., Rio, S., Isidro y Sánchez, J. 2021. Genotype by Environment Interaction Analysis of Agronomic Spring Barley Traits in Iceland Using AMMI, Factorial Regression Model and Linear Mixed Model. Agronomy 11, 499. DOI: 10.3390/agronomy11030499
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Gavrin, A., Loughlin, P.C., Brear, E., Griffith, O.W., Bedon, F., Suter Grotemeyer, M., Escudero, V., Reguera, M., Qu, Y., Mohd-Noor, S.N., Chen, C., Borges Osorio, M., Rentsch, D., González-Guerrero, M., Day, D.A., Smith, P.M.C. 2021. Soybean Yellow Stripe-like 7 is a symbiosome membrane peptide transporter important for nitrogen fixation. Plant Physiology. DOI: 10.1093/plphys/kiab044
Molina, A., Miedes, E., Bacete, L., Rodríguez, T., Mélida, H., Denancé, N., Sánchez-Vallet, A., Rivière, M.-P., López, G., Freydier, A., Barlet, X., Pattathil, S., Hahn, M., Goffner, D. 2021. Arabidopsis cell wall composition determines disease resistance specificity and fitness. Proceedings of the National Academy of Sciences 118, e2010243118. DOI: 10.1073/pnas.2010243118
Gomez-Sanchez, A., Santamaria, M.E., Gonzalez-Melendi, P., Muszynska, A., Matthess, C., Martinez, M., Diaz, I. 2021. Repression of barley cathepsins, HvPap-19 and HvPap-1, differentially alters grain composition and delays germination. Journal of Experimental Botany. DOI: 10.1093/jxb/erab007
- Are Physicochemical Properties Shaping the Allergenic Potency of Animal Allergens?
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López-Pérez, M., Haro-Moreno, J.M., Iranzo, J., Rodriguez-Valera, F. 2020. Genomes of the “Candidatus Actinomarinales” Order: Highly Streamlined Marine Epipelagic Actinobacteria. mSystems 5. DOI: 10.1128/mSystems.01041-20
- Standardising gene circuit design
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- How plants keep track of time to develop
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- The reason why European potatoes are not drought tolerant discovered
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- Unraveling the role of HOP as a central hub in response to stress in plants
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Meile, L., Peter, J., Puccetti, G., Alassimone, J., McDonald, B.A., Sánchez-Vallet, A. 2020. Chromatin Dynamics Contribute to the Spatiotemporal Expression Pattern of Virulence Genes in a Fungal Plant Pathogen. mBio 11. DOI: 10.1128/mBio.02343-20
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Santamaría-Hernando, S., Cerna-Vargas, J.P., Martínez-García, P.M., de Francisco-de Polanco, S., Nebreda, S., Rodríguez-Palenzuela, P., Rodríguez-Herva, J.J., López-Solanilla, E. 2020. Blue-light perception by epiphytic Pseudomonas syringae drives chemoreceptor expression, enabling efficient plant infection. Molecular Plant Pathology 21, 1606–1619. DOI: 10.1111/mpp.13001
Téllez, J., Muñoz-Barrios, A., Sopeña-Torres, S., Martín-Forero, A.F., Ortega, A., Pérez, R., Sanz, Y., Borja, M., de Marcos, A., Nicolas, M., Jahrmann, T., Mena, M., Jordá, L., Molina, A. 2020. YODA Kinase Controls a Novel Immune Pathway of Tomato Conferring Enhanced Disease Resistance to the Bacterium Pseudomonas syringae. Frontiers in Plant Science 11, 1569. DOI: 10.3389/fpls.2020.584471
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Lukan, T., Pompe‐Novak, M., Baebler, Š., Tušek‐Žnidarič, M., Kladnik, A., Križnik, M., Blejec, A., Zagorščak, M., Stare, K., Dušak, B., Coll, A., Pollmann, S., Morgiewicz, K., Hennig, J., Gruden, K. 2020. Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato. The Plant Journal. DOI: 10.1111/tpj.14953
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Ojeda-Martinez, D., Martinez, M., Diaz, I., Santamaria, M.E. 2020. Saving time maintaining reliability: a new method for quantification of Tetranychus urticae damage in Arabidopsis whole rosettes. BMC Plant Biology 20, 397. DOI: 10.1186/s12870-020-02584-0
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Roth-Walter, F., Afify, S.M., Pacios, L.F., Blokhuis, B.R., Redegeld, F., Regner, A., Petje, L.-M., Fiocchi, A., Untersmayr, E., Dvorak, Z., Hufnagl, K., Pali-Schöll, I., Jensen-Jarolim, E. 2020. Cow’s milk protein β-lactoglobulin confers resilience against allergy by targeting complexed iron into immune cells. Journal of Allergy and Clinical Immunology. DOI: 10.1016/j.jaci.2020.05.023
Clark, N.M., Fisher, A.P., Berckmans, B., Broeck, L.V. den, Nelson, E.C., Nguyen, T.T., Bustillo-Avendaño, E., Zebell, S.G., Moreno-Risueno, M.A., Simon, R., Gallagher, K.L., Sozzani, R. 2020. Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division. Proceedings of the National Academy of Sciences 117, 15332–15342. DOI: 10.1073/pnas.2002166117
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- Ecological fitting is the forerunner to diversification in a plant virus with broad host range
- SlCDF4 as a new key factor controlling tomato size and composition
Isidro‐Sánchez, J., Cusack, K.D., Verheecke‐Vaessen, C., Kahla, A., Bekele, W., Doohan, F., Magan, N., Medina, A. 2020. Genome-wide association mapping of Fusarium langsethiae infection and mycotoxin accumulation in oat (Avena sativa L.). The Plant Genome e20023. DOI: 10.1002/tpg2.20023
- Classifying the certainty of scholarly text
Yuste-Calvo, C., Ibort, P., Sánchez, F., Ponz, F. 2020. Turnip Mosaic Virus Coat Protein Deletion Mutants Allow Defining Dispensable Protein Domains for ‘in Planta’ eVLP Formation. Viruses 12, 661. DOI: 10.3390/v12060661
- How roots of crops adapt to climate change?
- Why do grass pollen patients suffer from asthma exarcerbation in autumn?
- Atomic structure of the most critical protein for global nitrogen fixation determined
- Structural and functional analysis of the PII nitrogen sensor in maritime pine
- The regulation of germination: an updated guide for researchers
- Seed dormancy and chemical modifications of nucleic acids
Barrera, A., Hereme, R., Ruiz-Lara, S., Larrondo, L.F., Gundel, P.E., Pollmann, S., Molina-Montenegro, M.A., Ramos, P. 2020. Fungal Endophytes Enhance the Photoprotective Mechanisms and Photochemical Efficiency in the Antarctic Colobanthus quitensis (Kunth) Bartl. Exposed to UV-B Radiation. Frontiers in Ecology and Evolution 8, 122. DOI: 10.3389/fevo.2020.00122
- Tolerance: A key plant defense against pathogens
- Trade-offs between host tolerances to different pathogens in plant–virus interactions
van Leeuwe, T.M., Wattjes, J., Niehues, A., Forn-Cuní, G., Geoffrion, N., Mélida, H., Arentshorst, M., Molina, A., Tsang, A., Meijer, A.H., Moerschbacher, B.M., Punt, P.J., Ram, A.F.J. 2020. A seven-membered cell wall related transglycosylase gene family in Aspergillus niger is relevant for cell wall integrity in cell wall mutants with reduced α-glucan or galactomannan. The Cell Surface 6, 100039. DOI: 10.1016/j.tcsw.2020.100039
Navas, M., Pérez‐Esteban, J., Torres, M.A., Hontoria, C., Moliner, A. 2020. Taxonomic and functional analysis of soil microbial communities in a mining site across a metal(loid) contamination gradient. European Journal of Soil Science. DOI: 10.1111/ejss.12979
- Identified a transporter that delivers iron to symbiotic nitrogen-fixing bacteria in root nodules
- A programming language for the design of synthetic biological circuits
- The Quest for Orthologs benchmark service and consensus calls in 2020
- The standardization of synthetic biological systems
- Botourmiaviridae: a new family of viruses
- Game-Theoretical Modeling of Interviral Conflicts Mediated by Mini-CRISPR Arrays
- Progress toward the isolation of "hidden" cell populations of dark-growing organs
- Plant defences against Tetranychus urticae: mind the gaps
Cuevas-Zuviría, B., Mínguez-Toral, M., Díaz-Perales, A., Garrido-Arandia, M., Pacios, L.F. 2020. Structural Dynamics of the Lipid Antigen-Binding Site of CD1d Protein. Biomolecules 10, 532. DOI: 10.3390/biom10040532
- Chitin triggers calcium-mediated immune response in model moss P. patens
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- Insights into the function of the new chromatin remodeling complex in plants
- Discovery of Pru p 9, a new allergen from peach tree pollen elliciting respirato
Olmo, R., Cabrera, J., Díaz‐Manzano, F.E., Ruiz‐Ferrer, V., Barcala, M., Ishida, T., García, A., Andrés, M.F., Ruiz‐Lara, S., Verdugo, I., Ochoa, M.P., Fukaki, H., del Pozo, J.C., Moreno‐Risueno, M.Á., Kyndt, T., Gheysen, G., Fenoll, C., Sawa, S., Escobar, C. 2020. Root-knot nematodes induce gall formation by recruiting developmental pathways of post-embryonic organogenesis and regeneration to promote transient pluripotency. New Phytologist. DOI: 10.1111/nph.16521
- Plant viral nanoparticles functionalized for antimicrobial and antibiofilm activities
- Pathogen emergence: virus infections cannot be isolated from their environment
- Crosstalk of auxin and brassinosteroid pathways through intracellular auxin transpor
Conesa, C.M., Saez, A., Navarro-Neila, S., de Lorenzo, L., Hunt, A.G., Sepúlveda, E.B., Baigorri, R., Garcia-Mina, J.M., Zamarreño, A.M., Sacristán, S., del Pozo, J.C. 2020. Alternative Polyadenylation and Salicylic Acid Modulate Root Responses to Low Nitrogen Availability. Plants 9, 251. DOI: 10.3390/plants9020251
- New functions of CDF factors in the regulation of plant growth and metabolism
Bacete, L., Mélida, H., López, G., Dabos, P., Tremousaygue, D., Denancé, N., Miedes, E., Bulone, V., Goffner, D., Molina, A. 2020. Arabidopsis Response Regulator 6 (ARR6) modulates plant cell wall composition and disease resistance. Molecular Plant-Microbe Interactions®. DOI: 10.1094/MPMI-12-19-0341-R
- Nicotianamine-enabled iron delivery for nitrogen fixation
Iglesias-Fernández, R., Pastor-Mora, E., Vicente-Carbajosa, J., Carbonero, P. 2020. A Possible Role of the Aleurone Expressed Gene HvMAN1 in the Hydrolysis of the Cell Wall Mannans of the Starchy Endosperm in Germinating Hordeum vulgare L. Seeds. Frontiers in Plant Science 10, 1706. DOI: 10.3389/fpls.2019.01706
- Ecosystem biodiversity modulates plant virus incidence
- Designing new molecular breeding tools for strategies of drought tolerance in Vicia
- Proof that chloroplasts can host active Nitrogenase
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